3D structure

PDB id
6OUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF2 accommodated state bound 70S complex at long incubation time
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUG*CUAACG*CGGACAG
Length
16 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OUO_007 not in the Motif Atlas
Homologous match to J3_4WF9_007
Geometric discrepancy: 0.1825
The information below is about J3_4WF9_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_07703.1
Basepair signature
cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

6OUO|1|1|C|2091
6OUO|1|1|U|2092
6OUO|1|1|G|2093
*
6OUO|1|1|C|2196
6OUO|1|1|U|2197
6OUO|1|1|A|2198
6OUO|1|1|A|2199
6OUO|1|1|C|2200
6OUO|1|1|G|2201
*
6OUO|1|1|C|2222
6OUO|1|1|G|2223
6OUO|1|1|G|2224
6OUO|1|1|A|2225
6OUO|1|1|C|2226
6OUO|1|1|A|2227
6OUO|1|1|G|2228

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L2
Chain G
50S ribosomal protein L9
Chain X
50S ribosomal protein L28

Coloring options:


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