J3_6OUO_029

3D structure

PDB id

6OUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound 70S complex at long incubation time

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6OUO|1|1|U|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OUO_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0942

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6OUO|1|1|G|297
6OUO|1|1|G|298
6OUO|1|1|A|299
6OUO|1|1|A|300
6OUO|1|1|G|301
*
6OUO|1|1|C|316
6OUO|1|1|G|317
6OUO|1|1|C|318
6OUO|1|1|G|319
6OUO|1|1|A|320
6OUO|1|1|U|321
6OUO|1|1|A|322
6OUO|1|1|C|323
6OUO|1|1|A|324
6OUO|1|1|G|325
*
6OUO|1|1|C|337
6OUO|1|1|G|338
6OUO|1|1|U|339
6OUO|1|1|A|340
6OUO|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24