J3_6OXA_011

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

6OXA|1|QA|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OXA_011 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1622

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6OXA|1|QA|U|1073
6OXA|1|QA|G|1074
*
6OXA|1|QA|U|1083
6OXA|1|QA|G|1084
6OXA|1|QA|U|1085
6OXA|1|QA|U|1086
6OXA|1|QA|G|1087
*
6OXA|1|QA|C|1098
6OXA|1|QA|G|1099
6OXA|1|QA|C|1100
6OXA|1|QA|A|1101
6OXA|1|QA|A|1102

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QE

30S ribosomal protein S5