J3_6OXA_018

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OXA_018 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0621

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6OXA|1|RA|C|698
6OXA|1|RA|A|699
6OXA|1|RA|G|700
*
6OXA|1|RA|C|732
6OXA|1|RA|G|733
6OXA|1|RA|A|734
6OXA|1|RA|A|735
6OXA|1|RA|C|736
*
6OXA|1|RA|G|760
6OXA|1|RA|A|761
6OXA|1|RA|U|762
6OXA|1|RA|G|763

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2