J3_6OXI_007
3D structure
- PDB id
- 6OXI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 6OXI|1|QA|A|974, 6OXI|1|QA|A|975, 6OXI|1|QA|G|976, 6OXI|1|QA|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OXI_007 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.143
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6OXI|1|QA|U|955
6OXI|1|QA|U|956
6OXI|1|QA|U|957
6OXI|1|QA|A|958
6OXI|1|QA|A|959
6OXI|1|QA|U|960
6OXI|1|QA|U|961
6OXI|1|QA|C|962
*
6OXI|1|QA|G|973
6OXI|1|QA|A|974
6OXI|1|QA|A|975
6OXI|1|QA|G|976
6OXI|1|QA|A|977
6OXI|1|QA|A|978
6OXI|1|QA|C|979
6OXI|1|QA|C|980
6OXI|1|QA|U|981
6OXI|1|QA|U|982
6OXI|1|QA|A|983
6OXI|1|QA|C|984
*
6OXI|1|QA|G|1221
6OXI|1|QA|G|1222
6OXI|1|QA|C|1223
6OXI|1|QA|G|1224
6OXI|1|QA|A|1225
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QJ
- 30S ribosomal protein S10
- Chain QM
- 30S ribosomal protein S13
- Chain QN
- 30S ribosomal protein S14 type Z
- Chain QS
- 30S ribosomal protein S19
- Chain QY
- Addiction module toxin, Txe/YoeB family
- Chain QZ
- Addiction module toxin, Txe/YoeB family
Coloring options: