J3_6OXI_074

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

GUG*CGAGUAC*GGAAUC

Length

16 nucleotides

Bulged bases

6OXI|1|YA|U|271|||C, 6OXI|1|YA|G|370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OXI|1|YA|G|271|||B
6OXI|1|YA|U|271|||C
6OXI|1|YA|G|271
*
6OXI|1|YA|C|366
6OXI|1|YA|G|370
6OXI|1|YA|A|371
6OXI|1|YA|G|372
6OXI|1|YA|U|373
6OXI|1|YA|A|374
6OXI|1|YA|C|375
*
6OXI|1|YA|G|399
6OXI|1|YA|G|400
6OXI|1|YA|A|401
6OXI|1|YA|A|402
6OXI|1|YA|U|403
6OXI|1|YA|C|404

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YI

50S ribosomal protein L9