J3_6P2H_002

3D structure

PDB id

6P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for 2'-deoxyguanosine recognition by the 2'-dG-II class of riboswitches

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUAAU*AGCCUCCACC*GUCACC

Length

21 nucleotides

Bulged bases

6P2H|1|A|C|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_22899.1

Basepair signature

cWW-tSW-cWH-F-F-cWW-F-cWW-cWS-F-F-cSW-F-cWW

Number of instances in this motif group

1

Unit IDs

6P2H|1|A|G|21
6P2H|1|A|U|22
6P2H|1|A|A|23
6P2H|1|A|A|24
6P2H|1|A|U|25
*
6P2H|1|A|A|45
6P2H|1|A|G|46
6P2H|1|A|C|47
6P2H|1|A|C|48
6P2H|1|A|U|49
6P2H|1|A|C|50
6P2H|1|A|C|51
6P2H|1|A|A|52
6P2H|1|A|C|53
6P2H|1|A|C|54
*
6P2H|1|A|G|74
6P2H|1|A|U|75
6P2H|1|A|C|76
6P2H|1|A|A|77
6P2H|1|A|C|78
6P2H|1|A|C|79

Current chains

Chain A

RNA (69-MER)

Nearby chains