J3_6P4G_003

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGA*UUAAGA*UA

Length

12 nucleotides

Bulged bases

6P4G|1|2|G|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P4G|1|2|U|682
6P4G|1|2|G|683
6P4G|1|2|G|684
6P4G|1|2|A|685
*
6P4G|1|2|U|917
6P4G|1|2|U|918
6P4G|1|2|A|919
6P4G|1|2|A|920
6P4G|1|2|G|921
6P4G|1|2|A|922
*
6P4G|1|2|U|1022
6P4G|1|2|A|1023

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

eS7

Chain M

uS17

Chain O

uS15

Chain X

uS8

Chain Y

uS12

Chain c

eS27