J3_6P4G_005

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

6P4G|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6P4G_005 not in the Motif Atlas

Homologous match to J3_4V88_033

Geometric discrepancy: 0.1144

The information below is about J3_4V88_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38616.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

6P4G|1|2|A|938
6P4G|1|2|U|939
6P4G|1|2|U|940
6P4G|1|2|C|941
*
6P4G|1|2|G|985
6P4G|1|2|G|986
6P4G|1|2|A|987
6P4G|1|2|C|988
6P4G|1|2|C|989
6P4G|1|2|A|990
6P4G|1|2|G|991
6P4G|1|2|A|992
6P4G|1|2|G|993
*
6P4G|1|2|C|1000
6P4G|1|2|A|1001
6P4G|1|2|U|1002
6P4G|1|2|U|1003
6P4G|1|2|U|1004

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain O

uS15

Chain P

uS11

Chain b

eS26