J3_6P4H_006

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

6P4H|1|2|C|1138, 6P4H|1|2|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P4H|1|2|C|1094
6P4H|1|2|C|1095
6P4H|1|2|G|1096
*
6P4H|1|2|U|1136
6P4H|1|2|U|1137
6P4H|1|2|C|1138
6P4H|1|2|C|1139
6P4H|1|2|G|1140
*
6P4H|1|2|C|1147
6P4H|1|2|A|1148
6P4H|1|2|A|1149
6P4H|1|2|A|1150
6P4H|1|2|G|1151

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2

Chain W

eS21

Chain X

uS8

Chain b

eS26

Chain c

eS27