J3_6P4H_009

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUAAUUU*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

6P4H|1|2|G|1256, 6P4H|1|2|A|1258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6P4H_009 not in the Motif Atlas

Homologous match to J3_8C3A_040

Geometric discrepancy: 0.078

The information below is about J3_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.3

Basepair signature

cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6P4H|1|2|C|1237
6P4H|1|2|U|1238
6P4H|1|2|U|1239
6P4H|1|2|A|1240
6P4H|1|2|A|1241
6P4H|1|2|U|1242
6P4H|1|2|U|1243
6P4H|1|2|U|1244
*
6P4H|1|2|G|1255
6P4H|1|2|G|1256
6P4H|1|2|G|1257
6P4H|1|2|A|1258
6P4H|1|2|A|1259
6P4H|1|2|A|1260
6P4H|1|2|C|1261
6P4H|1|2|C|1262
6P4H|1|2|U|1263
6P4H|1|2|C|1264
6P4H|1|2|A|1265
6P4H|1|2|C|1266
*
6P4H|1|2|G|1516
6P4H|1|2|G|1517
6P4H|1|2|C|1518
6P4H|1|2|U|1519
6P4H|1|2|G|1520

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

IAPV-IRES

Chain Q

uS19

Chain T

uS13

Chain V

uS10

Chain e

eS29