J3_6P4H_018

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAACAG*CAG*CGUUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P4H|1|1|G|6550
6P4H|1|1|A|6551
6P4H|1|1|A|6552
6P4H|1|1|C|6553
6P4H|1|1|A|6554
6P4H|1|1|G|6555
*
6P4H|1|1|C|6575
6P4H|1|1|A|6576
6P4H|1|1|G|6577
*
6P4H|1|1|C|6598
6P4H|1|1|G|6599
6P4H|1|1|U|6600
6P4H|1|1|U|6601
6P4H|1|1|C|6602

Current chains

Chain 1

IAPV-IRES

Nearby chains