J3_6P5I_014

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GCCGG*CCACGCGUCCCCCGCG

Length

24 nucleotides

Bulged bases

6P5I|1|5|C|1237, 6P5I|1|5|C|1248, 6P5I|1|5|G|1271, 6P5I|1|5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5I|1|5|C|983
6P5I|1|5|U|984
6P5I|1|5|C|985
*
6P5I|1|5|G|1070
6P5I|1|5|C|1071
6P5I|1|5|C|1072
6P5I|1|5|G|1073
6P5I|1|5|G|1074
*
6P5I|1|5|C|1236
6P5I|1|5|C|1237
6P5I|1|5|A|1238
6P5I|1|5|C|1239
6P5I|1|5|G|1244
6P5I|1|5|C|1245
6P5I|1|5|G|1246
6P5I|1|5|U|1247
6P5I|1|5|C|1248
6P5I|1|5|C|1249
6P5I|1|5|C|1250
6P5I|1|5|C|1251
6P5I|1|5|C|1252
6P5I|1|5|G|1271
6P5I|1|5|C|1272
6P5I|1|5|G|1273

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AC

uL4

Chain AE

eL6

Chain AF

uL30

Chain Ab

eL29