J3_6P5I_039

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUGG*CCGCUAAGGAGUG*CUCAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5I|1|5|G|1969
6P5I|1|5|A|1970
6P5I|1|5|U|1971
6P5I|1|5|G|1972
6P5I|1|5|G|1973
*
6P5I|1|5|C|1993
6P5I|1|5|C|1994
6P5I|1|5|G|1995
6P5I|1|5|C|1996
6P5I|1|5|U|1997
6P5I|1|5|A|1998
6P5I|1|5|A|1999
6P5I|1|5|G|2000
6P5I|1|5|G|2001
6P5I|1|5|A|2002
6P5I|1|5|G|2003
6P5I|1|5|U|2004
6P5I|1|5|G|2005
*
6P5I|1|5|C|2014
6P5I|1|5|U|2015
6P5I|1|5|C|2016
6P5I|1|5|A|2017
6P5I|1|5|C|2018

Current chains

Chain 5

28S rRNA

Nearby chains