3D structure

PDB id
6P5I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AGAUGG*CGUUCCGAAGGG*CAGCCGAU
Length
26 nucleotides
Bulged bases
6P5I|1|5|C|2470, 6P5I|1|5|A|2472, 6P5I|1|5|G|2475
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6P5I|1|5|A|2451
6P5I|1|5|G|2452
6P5I|1|5|A|2453
6P5I|1|5|U|2454
6P5I|1|5|G|2455
6P5I|1|5|G|2456
*
6P5I|1|5|C|2465
6P5I|1|5|G|2466
6P5I|1|5|U|2467
6P5I|1|5|U|2468
6P5I|1|5|C|2469
6P5I|1|5|C|2470
6P5I|1|5|G|2471
6P5I|1|5|A|2472
6P5I|1|5|A|2473
6P5I|1|5|G|2474
6P5I|1|5|G|2475
6P5I|1|5|G|2476
*
6P5I|1|5|C|2501
6P5I|1|5|A|2502
6P5I|1|5|G|2503
6P5I|1|5|C|2504
6P5I|1|5|C|2505
6P5I|1|5|G|2506
6P5I|1|5|A|2507
6P5I|1|5|U|2508

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain AA
uL2
Chain AG
eL8
Chain AN
eL15
Chain AX
eL23
Chain Aj
eL37

Coloring options:

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