J3_6P5N_001

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACAG*CAG*CGUU

Length

12 nucleotides

Bulged bases

6P5N|1|1|A|6554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5N|1|1|A|6551
6P5N|1|1|A|6552
6P5N|1|1|C|6553
6P5N|1|1|A|6554
6P5N|1|1|G|6555
*
6P5N|1|1|C|6575
6P5N|1|1|A|6576
6P5N|1|1|G|6577
*
6P5N|1|1|C|6598
6P5N|1|1|G|6599
6P5N|1|1|U|6600
6P5N|1|1|U|6601

Current chains

Chain 1

IAPV-IRES

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain T

uS13