J3_6P5N_009
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUAAUUUG*CGGGAAACCUCAC*GGCUG
- Length
- 27 nucleotides
- Bulged bases
- 6P5N|1|2|G|1256, 6P5N|1|2|A|1258, 6P5N|1|2|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5N|1|2|C|1237
6P5N|1|2|U|1238
6P5N|1|2|U|1239
6P5N|1|2|A|1240
6P5N|1|2|A|1241
6P5N|1|2|U|1242
6P5N|1|2|U|1243
6P5N|1|2|U|1244
6P5N|1|2|G|1245
*
6P5N|1|2|C|1254
6P5N|1|2|G|1255
6P5N|1|2|G|1256
6P5N|1|2|G|1257
6P5N|1|2|A|1258
6P5N|1|2|A|1259
6P5N|1|2|A|1260
6P5N|1|2|C|1261
6P5N|1|2|C|1262
6P5N|1|2|U|1263
6P5N|1|2|C|1264
6P5N|1|2|A|1265
6P5N|1|2|C|1266
*
6P5N|1|2|G|1516
6P5N|1|2|G|1517
6P5N|1|2|C|1518
6P5N|1|2|U|1519
6P5N|1|2|G|1520
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain Aq
- Eukaryotic peptide chain release factor subunit 1
- Chain Q
- uS19
- Chain R
- uS9
- Chain T
- uS13
- Chain V
- uS10
- Chain e
- eS29
- Chain g
- eS31
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