J3_6P5N_017
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUC*GCCGG*CCACGCGUCCCCCGCG
- Length
- 24 nucleotides
- Bulged bases
- 6P5N|1|5|C|1237, 6P5N|1|5|G|1271, 6P5N|1|5|C|1272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5N|1|5|C|983
6P5N|1|5|U|984
6P5N|1|5|C|985
*
6P5N|1|5|G|1070
6P5N|1|5|C|1071
6P5N|1|5|C|1072
6P5N|1|5|G|1073
6P5N|1|5|G|1074
*
6P5N|1|5|C|1236
6P5N|1|5|C|1237
6P5N|1|5|A|1238
6P5N|1|5|C|1239
6P5N|1|5|G|1244
6P5N|1|5|C|1245
6P5N|1|5|G|1246
6P5N|1|5|U|1247
6P5N|1|5|C|1248
6P5N|1|5|C|1249
6P5N|1|5|C|1250
6P5N|1|5|C|1251
6P5N|1|5|C|1252
6P5N|1|5|G|1271
6P5N|1|5|C|1272
6P5N|1|5|G|1273
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AC
- uL4
- Chain AE
- eL6
- Chain AF
- L30
- Chain Ab
- eL29
Coloring options: