3D structure

PDB id
6P5N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAGUC*GUGCG*CGAUG
Length
15 nucleotides
Bulged bases
6P5N|1|5|C|704, 6P5N|1|5|U|1295
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6P5N|1|5|C|451
6P5N|1|5|A|452
6P5N|1|5|G|453
6P5N|1|5|U|454
6P5N|1|5|C|455
*
6P5N|1|5|G|701
6P5N|1|5|U|702
6P5N|1|5|G|703
6P5N|1|5|C|704
6P5N|1|5|G|705
*
6P5N|1|5|C|1292
6P5N|1|5|G|1293
6P5N|1|5|A|1294
6P5N|1|5|U|1295
6P5N|1|5|G|1296

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AE
eL6
Chain Ae
eL32
Chain Af
eL33
Chain Ar
eL28

Coloring options:

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