J3_6P5N_038
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAGUC*GUGCG*CGAUG
- Length
- 15 nucleotides
- Bulged bases
- 6P5N|1|5|C|704, 6P5N|1|5|U|1295
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5N|1|5|C|451
6P5N|1|5|A|452
6P5N|1|5|G|453
6P5N|1|5|U|454
6P5N|1|5|C|455
*
6P5N|1|5|G|701
6P5N|1|5|U|702
6P5N|1|5|G|703
6P5N|1|5|C|704
6P5N|1|5|G|705
*
6P5N|1|5|C|1292
6P5N|1|5|G|1293
6P5N|1|5|A|1294
6P5N|1|5|U|1295
6P5N|1|5|G|1296
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AE
- eL6
- Chain Ae
- eL32
- Chain Af
- eL33
- Chain Ar
- eL28
Coloring options: