J3_6P5N_040
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAUAGACAGCAGGAUG*CGCUAAGGAGUG*CUCACCUGCCGAA
- Length
- 41 nucleotides
- Bulged bases
- 6P5N|1|5|A|1960, 6P5N|1|5|U|1997, 6P5N|1|5|A|1998, 6P5N|1|5|A|2002
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5N|1|5|U|1957
6P5N|1|5|A|1958
6P5N|1|5|U|1959
6P5N|1|5|A|1960
6P5N|1|5|G|1961
6P5N|1|5|A|1962
6P5N|1|5|C|1963
6P5N|1|5|A|1964
6P5N|1|5|G|1965
6P5N|1|5|C|1966
6P5N|1|5|A|1967
6P5N|1|5|G|1968
6P5N|1|5|G|1969
6P5N|1|5|A|1970
6P5N|1|5|U|1971
6P5N|1|5|G|1972
*
6P5N|1|5|C|1994
6P5N|1|5|G|1995
6P5N|1|5|C|1996
6P5N|1|5|U|1997
6P5N|1|5|A|1998
6P5N|1|5|A|1999
6P5N|1|5|G|2000
6P5N|1|5|G|2001
6P5N|1|5|A|2002
6P5N|1|5|G|2003
6P5N|1|5|U|2004
6P5N|1|5|G|2005
*
6P5N|1|5|C|2014
6P5N|1|5|U|2015
6P5N|1|5|C|2016
6P5N|1|5|A|2017
6P5N|1|5|C|2018
6P5N|1|5|C|2019
6P5N|1|5|U|2020
6P5N|1|5|G|2021
6P5N|1|5|C|2022
6P5N|1|5|C|2023
6P5N|1|5|G|2024
6P5N|1|5|A|2025
6P5N|1|5|A|2026
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Am
- eL40
Coloring options: