J3_6PC5_003

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6PC5|1|I|U|686, 6PC5|1|I|A|792, 6PC5|1|I|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC5_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0666

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6PC5|1|I|U|683
6PC5|1|I|G|684
6PC5|1|I|A|685
6PC5|1|I|U|686
6PC5|1|I|C|687
6PC5|1|I|U|688
6PC5|1|I|A|689
*
6PC5|1|I|U|773
6PC5|1|I|G|774
6PC5|1|I|G|775
*
6PC5|1|I|C|791
6PC5|1|I|A|792
6PC5|1|I|A|793
6PC5|1|I|A|794

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2