J3_6PC5_010

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

6PC5|1|I|U|2334, 6PC5|1|I|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PC5|1|I|C|2295
6PC5|1|I|U|2296
6PC5|1|I|A|2297
6PC5|1|I|A|2298
6PC5|1|I|U|2299
*
6PC5|1|I|A|2317
6PC5|1|I|G|2318
6PC5|1|I|G|2319
6PC5|1|I|U|2320
6PC5|1|I|U|2321
6PC5|1|I|A|2322
6PC5|1|I|G|2323
*
6PC5|1|I|C|2332
6PC5|1|I|A|2333
6PC5|1|I|U|2334
6PC5|1|I|A|2335
6PC5|1|I|A|2336
6PC5|1|I|G|2337

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA