J3_6PC5_011

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

6PC5|1|I|A|2518, 6PC5|1|I|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC5_011 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0762

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6PC5|1|I|C|2517
6PC5|1|I|A|2518
6PC5|1|I|U|2519
6PC5|1|I|C|2520
*
6PC5|1|I|G|2545
6PC5|1|I|U|2546
6PC5|1|I|A|2547
*
6PC5|1|I|U|2561
6PC5|1|I|U|2562
6PC5|1|I|U|2563
6PC5|1|I|A|2564
6PC5|1|I|A|2565
6PC5|1|I|A|2566
6PC5|1|I|G|2567

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3