J3_6PC5_019

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCA*UCAUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

6PC5|1|I|A|2388, 6PC5|1|I|U|2390, 6PC5|1|I|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC5_019 not in the Motif Atlas

Homologous match to J3_5J7L_070

Geometric discrepancy: 0.0683

The information below is about J3_5J7L_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6PC5|1|I|G|2282
6PC5|1|I|C|2283
6PC5|1|I|A|2284
*
6PC5|1|I|U|2384
6PC5|1|I|C|2385
6PC5|1|I|A|2386
6PC5|1|I|U|2387
6PC5|1|I|A|2388
6PC5|1|I|G|2389
6PC5|1|I|U|2390
6PC5|1|I|G|2391
6PC5|1|I|A|2392
6PC5|1|I|U|2393
6PC5|1|I|C|2394
6PC5|1|I|C|2395
*
6PC5|1|I|G|2421
6PC5|1|I|C|2422
6PC5|1|I|U|2423
6PC5|1|I|C|2424
6PC5|1|I|A|2425
6PC5|1|I|A|2426
6PC5|1|I|C|2427

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15