3D structure

PDB id
6PC6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound 47
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
UCGACC*GAAA*UA
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6PC6_007 not in the Motif Atlas
Homologous match to J3_5J7L_043
Geometric discrepancy: 0.0796
The information below is about J3_5J7L_043
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92705.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW
Number of instances in this motif group
1

Unit IDs

6PC6|1|I|U|1344
6PC6|1|I|C|1345
6PC6|1|I|G|1346
6PC6|1|I|A|1347
6PC6|1|I|C|1348
6PC6|1|I|C|1349
*
6PC6|1|I|G|1382
6PC6|1|I|A|1383
6PC6|1|I|A|1384
6PC6|1|I|A|1385
*
6PC6|1|I|U|1402
6PC6|1|I|A|1403

Current chains

Chain I
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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