J3_6PC6_009

3D structure

PDB id

6PC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 47

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

6PC6|1|I|U|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PC6|1|I|C|2295
6PC6|1|I|U|2296
6PC6|1|I|A|2297
6PC6|1|I|A|2298
6PC6|1|I|U|2299
*
6PC6|1|I|A|2317
6PC6|1|I|G|2318
6PC6|1|I|G|2319
6PC6|1|I|U|2320
6PC6|1|I|U|2321
6PC6|1|I|A|2322
6PC6|1|I|G|2323
*
6PC6|1|I|C|2332
6PC6|1|I|A|2333
6PC6|1|I|U|2334
6PC6|1|I|A|2335
6PC6|1|I|A|2336
6PC6|1|I|G|2337

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA