J3_6PC7_009

3D structure

PDB id

6PC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 46

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

6PC7|1|I|U|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC7_009 not in the Motif Atlas

Homologous match to J3_5J7L_071

Geometric discrepancy: 0.1667

The information below is about J3_5J7L_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44961.1

Basepair signature

cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F

Number of instances in this motif group

1

Unit IDs

6PC7|1|I|C|2295
6PC7|1|I|U|2296
6PC7|1|I|A|2297
6PC7|1|I|A|2298
6PC7|1|I|U|2299
*
6PC7|1|I|A|2317
6PC7|1|I|G|2318
6PC7|1|I|G|2319
6PC7|1|I|U|2320
6PC7|1|I|U|2321
6PC7|1|I|A|2322
6PC7|1|I|G|2323
*
6PC7|1|I|C|2332
6PC7|1|I|A|2333
6PC7|1|I|U|2334
6PC7|1|I|A|2335
6PC7|1|I|A|2336
6PC7|1|I|G|2337

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA