J3_6PC7_016

3D structure

PDB id

6PC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 46

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6PC7|1|I|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC7_016 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0625

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6PC7|1|I|G|297
6PC7|1|I|G|298
6PC7|1|I|A|299
6PC7|1|I|A|300
6PC7|1|I|G|301
*
6PC7|1|I|C|316
6PC7|1|I|G|317
6PC7|1|I|C|318
6PC7|1|I|G|319
6PC7|1|I|A|320
6PC7|1|I|U|321
6PC7|1|I|A|322
6PC7|1|I|C|323
6PC7|1|I|A|324
6PC7|1|I|G|325
*
6PC7|1|I|C|337
6PC7|1|I|G|338
6PC7|1|I|U|339
6PC7|1|I|A|340
6PC7|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4