J3_6PC8_009

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

6PC8|1|I|U|2334, 6PC8|1|I|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC8_009 not in the Motif Atlas

Homologous match to J3_5J7L_071

Geometric discrepancy: 0.1685

The information below is about J3_5J7L_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44961.1

Basepair signature

cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F

Number of instances in this motif group

1

Unit IDs

6PC8|1|I|C|2295
6PC8|1|I|U|2296
6PC8|1|I|A|2297
6PC8|1|I|A|2298
6PC8|1|I|U|2299
*
6PC8|1|I|A|2317
6PC8|1|I|G|2318
6PC8|1|I|G|2319
6PC8|1|I|U|2320
6PC8|1|I|U|2321
6PC8|1|I|A|2322
6PC8|1|I|G|2323
*
6PC8|1|I|C|2332
6PC8|1|I|A|2333
6PC8|1|I|U|2334
6PC8|1|I|A|2335
6PC8|1|I|A|2336
6PC8|1|I|G|2337

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA