J3_6PC8_013

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCGUAG*CGC*GGAAC

Length

15 nucleotides

Bulged bases

6PC8|1|J|U|14, 6PC8|1|J|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC8_013 not in the Motif Atlas

Homologous match to J3_5J7L_049

Geometric discrepancy: 0.131

The information below is about J3_5J7L_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89095.1

Basepair signature

cWW-F-F-F-tHS-F-cWW-F-cWW

Number of instances in this motif group

1

Unit IDs

6PC8|1|J|G|10
6PC8|1|J|C|11
6PC8|1|J|C|12
6PC8|1|J|G|13
6PC8|1|J|U|14
6PC8|1|J|A|15
6PC8|1|J|G|16
*
6PC8|1|J|C|68
6PC8|1|J|G|69
6PC8|1|J|C|70
*
6PC8|1|J|G|106
6PC8|1|J|G|107
6PC8|1|J|A|108
6PC8|1|J|A|109
6PC8|1|J|C|110

Current chains

Chain J

5S ribosomal RNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA