J3_6PC8_016

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6PC8|1|I|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC8_016 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0782

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6PC8|1|I|G|297
6PC8|1|I|G|298
6PC8|1|I|A|299
6PC8|1|I|A|300
6PC8|1|I|G|301
*
6PC8|1|I|C|316
6PC8|1|I|G|317
6PC8|1|I|C|318
6PC8|1|I|G|319
6PC8|1|I|A|320
6PC8|1|I|U|321
6PC8|1|I|A|322
6PC8|1|I|C|323
6PC8|1|I|A|324
6PC8|1|I|G|325
*
6PC8|1|I|C|337
6PC8|1|I|G|338
6PC8|1|I|U|339
6PC8|1|I|A|340
6PC8|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4