J3_6PCH_017

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6PCH|1|I|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCH_017 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0853

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6PCH|1|I|G|297
6PCH|1|I|G|298
6PCH|1|I|A|299
6PCH|1|I|A|300
6PCH|1|I|G|301
*
6PCH|1|I|C|316
6PCH|1|I|G|317
6PCH|1|I|C|318
6PCH|1|I|G|319
6PCH|1|I|A|320
6PCH|1|I|U|321
6PCH|1|I|A|322
6PCH|1|I|C|323
6PCH|1|I|A|324
6PCH|1|I|G|325
*
6PCH|1|I|C|337
6PCH|1|I|G|338
6PCH|1|I|U|339
6PCH|1|I|A|340
6PCH|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4