J3_6PCQ_002

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

6PCQ|1|I|U|72, 6PCQ|1|I|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCQ_002 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.0918

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

6PCQ|1|I|A|56
6PCQ|1|I|C|57
*
6PCQ|1|I|G|70
6PCQ|1|I|A|71
6PCQ|1|I|U|72
6PCQ|1|I|A|73
6PCQ|1|I|A|74
6PCQ|1|I|G|75
6PCQ|1|I|C|76
*
6PCQ|1|I|G|110
6PCQ|1|I|A|111
6PCQ|1|I|U|112
6PCQ|1|I|U|113
6PCQ|1|I|U|114

Current chains

Chain I

23S ribosomal RNA

Nearby chains