J3_6PCQ_003

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6PCQ|1|I|U|686, 6PCQ|1|I|A|792, 6PCQ|1|I|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCQ_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.071

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6PCQ|1|I|U|683
6PCQ|1|I|G|684
6PCQ|1|I|A|685
6PCQ|1|I|U|686
6PCQ|1|I|C|687
6PCQ|1|I|U|688
6PCQ|1|I|A|689
*
6PCQ|1|I|U|773
6PCQ|1|I|G|774
6PCQ|1|I|G|775
*
6PCQ|1|I|C|791
6PCQ|1|I|A|792
6PCQ|1|I|A|793
6PCQ|1|I|A|794

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2