J3_6PCQ_016

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6PCQ|1|I|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCQ_016 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.055

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6PCQ|1|I|G|297
6PCQ|1|I|G|298
6PCQ|1|I|A|299
6PCQ|1|I|A|300
6PCQ|1|I|G|301
*
6PCQ|1|I|C|316
6PCQ|1|I|G|317
6PCQ|1|I|C|318
6PCQ|1|I|G|319
6PCQ|1|I|A|320
6PCQ|1|I|U|321
6PCQ|1|I|A|322
6PCQ|1|I|C|323
6PCQ|1|I|A|324
6PCQ|1|I|G|325
*
6PCQ|1|I|C|337
6PCQ|1|I|G|338
6PCQ|1|I|U|339
6PCQ|1|I|A|340
6PCQ|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4