J3_6PCQ_018

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCA*UCAUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

6PCQ|1|I|A|2388, 6PCQ|1|I|U|2390, 6PCQ|1|I|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCQ_018 not in the Motif Atlas

Homologous match to J3_5J7L_070

Geometric discrepancy: 0.0752

The information below is about J3_5J7L_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6PCQ|1|I|G|2282
6PCQ|1|I|C|2283
6PCQ|1|I|A|2284
*
6PCQ|1|I|U|2384
6PCQ|1|I|C|2385
6PCQ|1|I|A|2386
6PCQ|1|I|U|2387
6PCQ|1|I|A|2388
6PCQ|1|I|G|2389
6PCQ|1|I|U|2390
6PCQ|1|I|G|2391
6PCQ|1|I|A|2392
6PCQ|1|I|U|2393
6PCQ|1|I|C|2394
6PCQ|1|I|C|2395
*
6PCQ|1|I|G|2421
6PCQ|1|I|C|2422
6PCQ|1|I|U|2423
6PCQ|1|I|C|2424
6PCQ|1|I|A|2425
6PCQ|1|I|A|2426
6PCQ|1|I|C|2427

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15