J3_6PCR_003

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6PCR|1|I|U|686, 6PCR|1|I|A|792, 6PCR|1|I|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCR_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0749

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6PCR|1|I|U|683
6PCR|1|I|G|684
6PCR|1|I|A|685
6PCR|1|I|U|686
6PCR|1|I|C|687
6PCR|1|I|U|688
6PCR|1|I|A|689
*
6PCR|1|I|U|773
6PCR|1|I|G|774
6PCR|1|I|G|775
*
6PCR|1|I|C|791
6PCR|1|I|A|792
6PCR|1|I|A|793
6PCR|1|I|A|794

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2