J3_6PCR_009

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

6PCR|1|I|U|2334, 6PCR|1|I|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCR_009 not in the Motif Atlas

Homologous match to J3_5J7L_071

Geometric discrepancy: 0.1675

The information below is about J3_5J7L_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44961.1

Basepair signature

cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F

Number of instances in this motif group

1

Unit IDs

6PCR|1|I|C|2295
6PCR|1|I|U|2296
6PCR|1|I|A|2297
6PCR|1|I|A|2298
6PCR|1|I|U|2299
*
6PCR|1|I|A|2317
6PCR|1|I|G|2318
6PCR|1|I|G|2319
6PCR|1|I|U|2320
6PCR|1|I|U|2321
6PCR|1|I|A|2322
6PCR|1|I|G|2323
*
6PCR|1|I|C|2332
6PCR|1|I|A|2333
6PCR|1|I|U|2334
6PCR|1|I|A|2335
6PCR|1|I|A|2336
6PCR|1|I|G|2337

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA