J3_6PCR_018

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCA*UCAUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

6PCR|1|I|A|2388, 6PCR|1|I|U|2390, 6PCR|1|I|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCR_018 not in the Motif Atlas

Homologous match to J3_5J7L_070

Geometric discrepancy: 0.0712

The information below is about J3_5J7L_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6PCR|1|I|G|2282
6PCR|1|I|C|2283
6PCR|1|I|A|2284
*
6PCR|1|I|U|2384
6PCR|1|I|C|2385
6PCR|1|I|A|2386
6PCR|1|I|U|2387
6PCR|1|I|A|2388
6PCR|1|I|G|2389
6PCR|1|I|U|2390
6PCR|1|I|G|2391
6PCR|1|I|A|2392
6PCR|1|I|U|2393
6PCR|1|I|C|2394
6PCR|1|I|C|2395
*
6PCR|1|I|G|2421
6PCR|1|I|C|2422
6PCR|1|I|U|2423
6PCR|1|I|C|2424
6PCR|1|I|A|2425
6PCR|1|I|A|2426
6PCR|1|I|C|2427

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15