J3_6PCS_019

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCA*UCAUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

6PCS|1|I|A|2388, 6PCS|1|I|U|2390, 6PCS|1|I|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCS_019 not in the Motif Atlas

Homologous match to J3_5J7L_070

Geometric discrepancy: 0.0782

The information below is about J3_5J7L_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6PCS|1|I|G|2282
6PCS|1|I|C|2283
6PCS|1|I|A|2284
*
6PCS|1|I|U|2384
6PCS|1|I|C|2385
6PCS|1|I|A|2386
6PCS|1|I|U|2387
6PCS|1|I|A|2388
6PCS|1|I|G|2389
6PCS|1|I|U|2390
6PCS|1|I|G|2391
6PCS|1|I|A|2392
6PCS|1|I|U|2393
6PCS|1|I|C|2394
6PCS|1|I|C|2395
*
6PCS|1|I|G|2421
6PCS|1|I|C|2422
6PCS|1|I|U|2423
6PCS|1|I|C|2424
6PCS|1|I|A|2425
6PCS|1|I|A|2426
6PCS|1|I|C|2427

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15