J3_6PCT_003

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6PCT|1|I|U|686, 6PCT|1|I|A|792, 6PCT|1|I|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCT_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0808

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6PCT|1|I|U|683
6PCT|1|I|G|684
6PCT|1|I|A|685
6PCT|1|I|U|686
6PCT|1|I|C|687
6PCT|1|I|U|688
6PCT|1|I|A|689
*
6PCT|1|I|U|773
6PCT|1|I|G|774
6PCT|1|I|G|775
*
6PCT|1|I|C|791
6PCT|1|I|A|792
6PCT|1|I|A|793
6PCT|1|I|A|794

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2