J3_6PCT_016

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6PCT|1|I|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCT_016 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0653

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6PCT|1|I|G|297
6PCT|1|I|G|298
6PCT|1|I|A|299
6PCT|1|I|A|300
6PCT|1|I|G|301
*
6PCT|1|I|C|316
6PCT|1|I|G|317
6PCT|1|I|C|318
6PCT|1|I|G|319
6PCT|1|I|A|320
6PCT|1|I|U|321
6PCT|1|I|A|322
6PCT|1|I|C|323
6PCT|1|I|A|324
6PCT|1|I|G|325
*
6PCT|1|I|C|337
6PCT|1|I|G|338
6PCT|1|I|U|339
6PCT|1|I|A|340
6PCT|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4