J3_6PCT_018

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCA*UCAUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

6PCT|1|I|A|2388, 6PCT|1|I|U|2390, 6PCT|1|I|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCT_018 not in the Motif Atlas

Homologous match to J3_5J7L_070

Geometric discrepancy: 0.0761

The information below is about J3_5J7L_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6PCT|1|I|G|2282
6PCT|1|I|C|2283
6PCT|1|I|A|2284
*
6PCT|1|I|U|2384
6PCT|1|I|C|2385
6PCT|1|I|A|2386
6PCT|1|I|U|2387
6PCT|1|I|A|2388
6PCT|1|I|G|2389
6PCT|1|I|U|2390
6PCT|1|I|G|2391
6PCT|1|I|A|2392
6PCT|1|I|U|2393
6PCT|1|I|C|2394
6PCT|1|I|C|2395
*
6PCT|1|I|G|2421
6PCT|1|I|C|2422
6PCT|1|I|U|2423
6PCT|1|I|C|2424
6PCT|1|I|A|2425
6PCT|1|I|A|2426
6PCT|1|I|C|2427

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15