J3_6PJ6_011

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

6PJ6|1|I|U|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PJ6|1|I|C|2295
6PJ6|1|I|U|2296
6PJ6|1|I|A|2297
6PJ6|1|I|A|2298
6PJ6|1|I|U|2299
*
6PJ6|1|I|A|2317
6PJ6|1|I|G|2318
6PJ6|1|I|G|2319
6PJ6|1|I|U|2320
6PJ6|1|I|U|2321
6PJ6|1|I|A|2322
6PJ6|1|I|G|2323
*
6PJ6|1|I|C|2332
6PJ6|1|I|A|2333
6PJ6|1|I|U|2334
6PJ6|1|I|A|2335
6PJ6|1|I|A|2336
6PJ6|1|I|G|2337

Current chains

Chain I

23S rRNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain N

50S ribosomal protein L5

Chain W

50S ribosomal protein L18

Chain e

50S ribosomal protein L27