J3_6PJ6_022

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CU(2MG)*CGGCCG(PSU)AAC(3TD)A(PSU)AACGGUCCUAAGGUAG*CGAAUG

Length

38 nucleotides

Bulged bases

6PJ6|1|I|A|1913, 6PJ6|1|I|C|1914, 6PJ6|1|I|U|1971

QA status

Modified nucleotides: 2MG, PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PJ6|1|I|C|1833
6PJ6|1|I|U|1834
6PJ6|1|I|2MG|1835
*
6PJ6|1|I|C|1905
6PJ6|1|I|G|1906
6PJ6|1|I|G|1907
6PJ6|1|I|C|1908
6PJ6|1|I|C|1909
6PJ6|1|I|G|1910
6PJ6|1|I|PSU|1911
6PJ6|1|I|A|1912
6PJ6|1|I|A|1913
6PJ6|1|I|C|1914
6PJ6|1|I|3TD|1915
6PJ6|1|I|A|1916
6PJ6|1|I|PSU|1917
6PJ6|1|I|A|1918
6PJ6|1|I|A|1919
6PJ6|1|I|C|1920
6PJ6|1|I|G|1921
6PJ6|1|I|G|1922
6PJ6|1|I|U|1923
6PJ6|1|I|C|1924
6PJ6|1|I|C|1925
6PJ6|1|I|U|1926
6PJ6|1|I|A|1927
6PJ6|1|I|A|1928
6PJ6|1|I|G|1929
6PJ6|1|I|G|1930
6PJ6|1|I|U|1931
6PJ6|1|I|A|1932
6PJ6|1|I|G|1933
*
6PJ6|1|I|C|1967
6PJ6|1|I|G|1968
6PJ6|1|I|A|1969
6PJ6|1|I|A|1970
6PJ6|1|I|U|1971
6PJ6|1|I|G|1972

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L2