J3_6PPF_005

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PPF_005 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.1283

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.2

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

6PPF|1|A|C|745
6PPF|1|A|A|746
6PPF|1|A|G|747
*
6PPF|1|A|C|779
6PPF|1|A|G|780
6PPF|1|A|A|781
6PPF|1|A|A|782
6PPF|1|A|C|783
*
6PPF|1|A|G|807
6PPF|1|A|A|808
6PPF|1|A|U|809
6PPF|1|A|G|810

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2