J3_6PPF_009

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACUGUUAAACACAG*UGAC*GCAAC

Length

24 nucleotides

Bulged bases

6PPF|1|A|A|1814

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PPF|1|A|G|1801
6PPF|1|A|A|1802
6PPF|1|A|C|1803
6PPF|1|A|U|1804
6PPF|1|A|G|1805
6PPF|1|A|U|1806
6PPF|1|A|U|1807
6PPF|1|A|A|1814
6PPF|1|A|A|1815
6PPF|1|A|A|1816
6PPF|1|A|C|1817
6PPF|1|A|A|1818
6PPF|1|A|C|1819
6PPF|1|A|A|1820
6PPF|1|A|G|1821
*
6PPF|1|A|U|1856
6PPF|1|A|G|1857
6PPF|1|A|A|1858
6PPF|1|A|C|1859
*
6PPF|1|A|G|2004
6PPF|1|A|C|2005
6PPF|1|A|A|2006
6PPF|1|A|A|2007
6PPF|1|A|C|2008

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2