J3_6PPF_023

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAUCUA*UAGGG*CAAUCGAA

Length

20 nucleotides

Bulged bases

6PPF|1|A|U|733, 6PPF|1|A|G|823, 6PPF|1|A|A|836, 6PPF|1|A|U|837, 6PPF|1|A|G|839, 6PPF|1|A|A|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PPF|1|A|U|730
6PPF|1|A|G|731
6PPF|1|A|A|732
6PPF|1|A|U|733
6PPF|1|A|C|734
6PPF|1|A|U|735
6PPF|1|A|A|736
*
6PPF|1|A|U|820
6PPF|1|A|A|821
6PPF|1|A|G|822
6PPF|1|A|G|823
6PPF|1|A|G|824
*
6PPF|1|A|C|834
6PPF|1|A|A|835
6PPF|1|A|A|836
6PPF|1|A|U|837
6PPF|1|A|C|838
6PPF|1|A|G|839
6PPF|1|A|A|840
6PPF|1|A|A|841

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain S

50S ribosomal protein L22

Chain d

50S ribosomal protein L34