J3_6Q8Y_010
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q8Y_010 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.2225
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6Q8Y|1|2|U|1283
6Q8Y|1|2|C|1284
6Q8Y|1|2|U|1285
6Q8Y|1|2|U|1286
6Q8Y|1|2|A|1287
6Q8Y|1|2|G|1288
*
6Q8Y|1|2|C|1327
6Q8Y|1|2|G|1328
6Q8Y|1|2|A|1329
6Q8Y|1|2|G|1330
6Q8Y|1|2|A|1331
6Q8Y|1|2|C|1332
*
6Q8Y|1|2|G|1419
6Q8Y|1|2|C|1420
6Q8Y|1|2|A|1421
6Q8Y|1|2|A|1422
6Q8Y|1|2|U|1423
6Q8Y|1|2|A|1424
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- 40S ribosomal protein S3
- Chain F
- 40S ribosomal protein S16-A
- Chain G
- 40S ribosomal protein S17-A
- Chain J
- 40S ribosomal protein S20
- Chain M
- 40S ribosomal protein S29-A
- Chain R
- 40S ribosomal protein S2
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