J3_6Q8Y_026
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|G|2549, 6Q8Y|1|BQ|U|2550, 6Q8Y|1|BQ|U|2551, 6Q8Y|1|BQ|A|2554, 6Q8Y|1|BQ|U|2558, 6Q8Y|1|BQ|U|2559, 6Q8Y|1|BQ|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q8Y_026 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.1336
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6Q8Y|1|BQ|A|2529
6Q8Y|1|BQ|G|2530
6Q8Y|1|BQ|C|2531
6Q8Y|1|BQ|U|2532
*
6Q8Y|1|BQ|A|2547
6Q8Y|1|BQ|C|2548
6Q8Y|1|BQ|G|2549
6Q8Y|1|BQ|U|2550
6Q8Y|1|BQ|U|2551
6Q8Y|1|BQ|C|2552
6Q8Y|1|BQ|U|2553
6Q8Y|1|BQ|A|2554
6Q8Y|1|BQ|G|2555
6Q8Y|1|BQ|C|2556
6Q8Y|1|BQ|A|2557
6Q8Y|1|BQ|U|2558
6Q8Y|1|BQ|U|2559
6Q8Y|1|BQ|C|2560
6Q8Y|1|BQ|A|2561
6Q8Y|1|BQ|A|2562
6Q8Y|1|BQ|G|2563
*
6Q8Y|1|BQ|U|2578
6Q8Y|1|BQ|G|2579
6Q8Y|1|BQ|A|2580
6Q8Y|1|BQ|U|2581
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AA
- 60S ribosomal protein L8-A
- Chain AH
- 60S ribosomal protein L25
- Chain AN
- 60S ribosomal protein L27-A
- Chain AT
- 60S ribosomal protein L43-A
- Chain AW
- 60S ribosomal protein L2-A
- Chain AY
- 60S ribosomal protein L30
- Chain BN
- 60S ribosomal protein L34-A
Coloring options: